1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gagaagtttatccaaatcccacattaatgaggatgctgtgttaccatcttttgtactgttggttctttaatctaaatagctttcaattttgttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAGTGCTGAACCTGCTCCATCTACCGTGGCAATATCTGAAGCGCTTGCCAA
species | Glycine max |
transcript | GLYMA17G01230.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAEST: gi|193532210|gb|FK491932.1|FK491932
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAEST: gi|208298448|gb|GE089757.1|GE089757
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAEST: gi|208088930|gb|GD887788.1|GD887788
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
EST: AAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAEST: gi|151409070|gb|EV278878.1|EV278878
genomic: AAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAEST: gi|193586598|gb|FK541270.1|FK541270
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
EST: AAGATGAATCAGTTGCTAGCTAAACACATTATCCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGEST: gi|207782991|gb|GD754548.1|GD754548
genomic: AAGATGAATCAGTTGCTAGCTAAACACATTATCCC-ACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGG
EST: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAA AGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
genomic: CAAGATGAATCAGTTGCTAGCTAAACACATTATCCCACTTGGTCCTACAAgtaagtagta ... gttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAA
atcttttgtactgttggttctttaatctaaatagctttcaattttgttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAGTGCTGAACCTGCTCCATCTACCGTGGCAATATCTGAAGCGCTTGCCAA
atctaaa putative branch site (score: 3)
ttttgtt putative PPT
ttctttaatctaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagaagtttatccaaatcccacattaatgaggatgctgtgttaccatcttttgtactgttggttctttaatctaaatagctttcaattttgttgctccagAGGAGTCACAGGCTAAACGAGTGAAGGTGGATACTGAAATTAAGACTGAAAGTGCTGAACCTGCTCCATCTACCGTGGCAATATCTGAAGCGCTTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - -atccaaa
- - - - - - - - tcccaca
- - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - actgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctttca