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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcaccattactaagctattttcctgtttctttcttaaaaggatcagtcagcaaatatttatggaaaattcttgctcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGC

Basic information

species Glycine max
transcript GLYMA17G00910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00910.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os09g07830.1 (Oryza sativa), 3'ss of exon 3
gtaaatcaccattactaagctattttcctgt-ttctttcttaaaaggatcagtcagcaaatatttatggaaaattcttgctcatctg--cagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGC
            ||| |   | || || | |  | | | |  ||  | ||  | | |  | || ||   || ||  |   |    ||  |||||||||| ||||| ||||||||||||||| | || ||||||||||| || ||||| |||||  | ||||| ||||| ||||| |||||||| ||||| ||
--------gtgataccagtatcttctcatatgctgtatgtgtaattgttcttttaacccaaatataactaacatcatcagtgtggtgatcagCTGCTCTGAAGAGGGCAAATGTTGATCCAGCCCTTGTGCAAGAGGTCTTCTTTGGTAATGTGTTGAGTGCTAATTTGGGGCAAGCTCCTGCAAGACAAGC

upper sequence: GLYMA17G00910.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv00s0531g00050.t01 (Vitis vinifera), 3'ss of exon 2
gtaaatcaccattactaagctattttcct--gtttctttcttaaaaggatcagtcagcaaatatttatggaaaattcttgctcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGC
|||| | | | | |||   |||    | |   |||  ||| |    |||             | || ||  |     |  |  | ||| || |||||| |  || |||||| |||||||||| || || ||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||| || ||||||||
gtaa-ttatcctaacttcactaaccacttcaattttattcctttggggactga---------aattctgcgattcaatcacgaaactgtagGTGCTCTTAGAAGGGCAAATATTGATCCATCGCTGGTCCAAGAGGTGTTCTTTGGGAACGTTCTGAGTGCAAATTTGGGGCAAGCTCCGGCAAGACAGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213587273|gb|DB965935.1|DB965935
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|18730350|gb|BM525828.1|BM525828
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|9986219|gb|BE660327.1|BE660327
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|298194892|gb|HO043364.1|HO043364
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCCCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|192294916|gb|FG986639.1|FG986639
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAACGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|213613699|gb|DB963345.1|DB963345
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|19452347|gb|BM953757.1|BM953757
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|207748253|gb|GD719922.1|GD719922
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
EST: gi|14259973|gb|BG882881.1|BG882881
EST:     CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTTCTATTAAGA                         CTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT
genomic: CACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAgtaaatcacc ... tcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttaaaaggatcagtcagcaaatatttatggaaaattcttgctcatctgcagCTGCTCTCAAGAGAGCAAATGTTGATCCATCACTCGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGC
                                      ttcttgctc  CT-rich tract
                      aaatatttatggaaaa  TA-rich tract