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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttaacaatatttgttttacacatttggccataataacttaatcaaattgctaaactcccttaataactgagtttcaccactcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGATCAATTACTTGCTAGAGAAAG

Basic information

species Glycine max
transcript GLYMA09G30910.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os01g32364.1 (Oryza sativa), 3'ss of exon 3
------------------------gtaattta-----acaatatttgttttacacatttggccataataacttaatcaaattgctaaactcccttaataactgagtttcaccactcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGATCAATTACTTGCTAGAGAAAG
                         |||| ||     ||||| ||  | ||    | |||        || | |  |||| |     |      |  |   || || |   ||||     || |||||||||  ||||||||||||||||||| |||||||| || || ||||| || ||  ||||  ||| ||
gtaagctcccttaagttgctcgtcttaatctacgagtacaattttattattttggacttgatttctgaaagtgatgcaaactaacttatatttctcttggatgggtgtt--cactgtcctagCTGGAACTGGGAAAGTAAATTGGAAAGGTGTGGCATACTATAACAGATTGATAAACTATATGCTGAAGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710515|gb|BW662051.1|BW662051
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|208218049|gb|GE017873.1|GE017873
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|213619687|gb|DB965633.1|DB965633
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|193500052|gb|FK463933.1|FK463933
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|208291083|gb|GE081551.1|GE081551
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|193383973|gb|FK351378.1|FK351378
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAA-TTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGCGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|208211522|gb|GE014025.1|GE014025
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAA
EST: gi|193363574|gb|FK331298.1|FK331298
EST:     TTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTAACCAA
genomic: TTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTT--CCAA
EST: gi|193709892|gb|FK642142.1|FK642142
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAAGGTAGTAGCATACTACAA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAA-GGT-GTAGCATACTACAA
EST: gi|193389816|gb|FK353581.1|FK353581
EST:     AATTTTGATGCCTTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: AATTTTGATGCC-TACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|193660704|gb|FK606428.1|FK606428
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|192332517|gb|FK025622.1|FK025622
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|298166439|gb|HO009878.1|HO009878
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|208117295|gb|GD918209.1|GD918209
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|207745315|gb|GD715417.1|GD715417
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|209718599|gb|BW674725.1|BW674725
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
EST: gi|208092374|gb|GD885491.1|GD885491
EST:     GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAA                         ATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA
genomic: GAATTTTGATGCCTACCGGTTCTCAATCTCGTGGTCCAGAATTTTTCCAAgtaatttaac ... actcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacttaatcaaattgctaaactcccttaataactgagtttcaccactcctacagATGGAACTGGCCAAGTAAATTGGAAAGGTGTAGCATACTACAATAGGTTGATCAATTACTTGCTAGAGAAAG
                           taataac  putative branch site (score: 1)
                                           ccactcct  putative PPT
     taatcaaatt  TA-rich tract