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...aatgtgatacattgttgcatcaaggacactactttagctaaatcattgcataaggtgtaatttgctcagtagatattgaatatttggtatatttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGTCATGCAGGCAGTGCACA
species | Glycine max |
transcript | GLYMA09G29070.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCATG GATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCAEST: gi|298197385|gb|HO044864.1|HO044864
genomic: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGGgtaatctact ... atttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCA
EST: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG GATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCAEST: gi|209727032|gb|BW680326.1|BW680326
genomic: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGGgtaatctact ... atttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCA
EST: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGG GATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCA
genomic: GCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGGgtaatctact ... atttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCA
ttgcataaggtgtaatttgctcagtagatattgaatatttggtatatttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGTCATGCAGGCAGTGCACA
tattttt CT-rich tract
tagatattgaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtgatacattgttgcatcaaggacactactttagctaaatcattgcataaggtgtaatttgctcagtagatattgaatatttggtatatttttgcagGATTGTTGAGAGTGTGGGACAGGGAGTGACTGAATTCAAAGAGGGGGACCATGTGCTAACAGTATTCATTGGAGAATGCATGTCATGCAGGCAGTGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - tgttgca
- - - - - - - - - - - - -acactac
- - - - - - - - - - - - - - - - - - - - - - - tgcataa