1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttaagtacccttgctttgttatgtctagagtggacaggtttttttgctgttccattttacagttgcatggtatcgaacatgacataaaaatgtattgcagGGGAGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTGGGATCTGCAAAAGGGCTGGCATATCTACACGAAGATT
species | Glycine max |
transcript | GLYMA06G08610.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTCGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATG GGGAGGGGAATACCTTCTTACAATGGTCGATGAGGATTAAAATTGCCTTGTEST: gi|20498289|gb|BQ273219.1|BQ273219
genomic: GCTCGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATGgtaagtctaa ... tgtattgcagGGGAGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTGG
EST: GCTCGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATG GGGAGGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTG
genomic: GCTCGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATGgtaagtctaa ... tgtattgcagGGGAGGGG-AATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTG
gctgttccattttacagttgcatggtatcgaacatgacataaaaatgtattgcagGGGAGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTGGGATCTGCAAAAGGGCTGGCATATCTACACGAAGATT
acataaaaatgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaagtacccttgctttgttatgtctagagtggacaggtttttttgctgttccattttacagttgcatggtatcgaacatgacataaaaatgtattgcagGGGAGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTGGGATCTGCAAAAGGGCTGGCATATCTACACGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - ccttgct
- - - - - - - - tgttatg
- - - - - - - - - - - - - - - - - - - - - tttgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaa