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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatcaaacctacctgacctcctttatttttcgtctgtttcttttcacttgtgtactttaatgtttaaacagcaatatatacaattccttaaatcattactggtaatgcttttaaacttccgtcttttgattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAG

Basic information

species Glycine max
transcript GLYMA20G36690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990832|gb|BI316505.1|BI316505
EST:     GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAA                         ATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
genomic: GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAAgtgagaatca ... gattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
EST: gi|209702825|gb|BW660690.1|BW660690
EST:     GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAA                         ATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
genomic: GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAAgtgagaatca ... gattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
EST: gi|207795892|gb|GD764117.1|GD764117
EST:     GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAGAAA                         ATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
genomic: GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAAgtgagaatca ... gattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
EST: gi|193548153|gb|FK504810.1|FK504810
EST:     TTCTAGTGAGACATAAGCATG-AAAG-AAAA                         ATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
genomic: TTCTAGTGAGACATAAGCATGAAAAGAAAAAgtgagaatca ... gattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
EST: gi|193319807|gb|FK285202.1|FK285202
EST:     GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAA                         ATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG
genomic: GGTGCTTTTGGTTCAGCGCTTCTAGTGAGACATAAGCATGAAAAGAAAAAgtgagaatca ... gattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccttaaatcattactggtaatgcttttaaacttccgtcttttgattacatagATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACTGAGCGCTCTCGTAGATCTGCACACCTGGAG
                                         ttttgat  putative branch site (score: 4)
                                       tcttttg  CT-rich tract
     ttaaatcatta  TA-rich tract