1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcttccattacttctttgtcatataccggtgttctgccacagaaacatgcaagctaccagcagattctatctccctctcttatttgttttattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCTTTACTCTCAATGAAGCCTGAGGACACTTCTTTGGAATCCAACTCCAAG
species | Glycine max |
transcript | GLYMA20G32790.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCG CACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCEST: gi|13180749|gb|BG352089.1|BG352089
genomic: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCGgtatatatat ... tattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCC
EST: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCG CACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCEST: gi|13180804|gb|BG352144.1|BG352144
genomic: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCGgtatatatat ... tattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCC
EST: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCG CACAGTGAACCAGGATGGGTT-AAACCAAATCTAGAGACTCATCTTCATCC
genomic: ATCAATAGACCCATTTTGCGCATTCCCACACTCGCCATTCATCTTGACCGgtatatatat ... tattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCC
acatgcaagctaccagcagattctatctccctctcttatttgttttattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCTTTACTCTCAATGAAGCCTGAGGACACTTCTTTGGAATCCAACTCCAAG
ttctatctccctctct CT-rich tract
tcttatttgttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttccattacttctttgtcatataccggtgttctgccacagaaacatgcaagctaccagcagattctatctccctctcttatttgttttattgtttagCACAGTGAACCAGGATGGGTTTAAACCAAATCTAGAGACTCATCTTCATCCTTTACTCTCAATGAAGCCTGAGGACACTTCTTTGGAATCCAACTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
ttcttcc
- - - - - - - - - - catatac
- - - - - - - - - - - - - - - - - ctgccac
- - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - accagca