1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tattgtcttagcagagaatgaatagtgcttcctttacaagtagagttttactttcactagttcttgaaagattaataatcttttcctcttttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCATGCTGCGTGCAAAAAATCAG
species | Glycine max |
transcript | GLYMA20G30820.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAA AATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCEST: gi|27809194|gb|CB063616.1|CB063616
genomic: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAAgtaccttctc ... ttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTC
EST: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAA AATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCEST: gi|9203883|gb|BE330107.1|BE330107
genomic: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAAgtaccttctc ... ttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTC
EST: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAA AATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTC
genomic: AACCTTCCAAGGTCATTCACGTTCGAAATGTGGGGCACGAAATATCTGAAgtaccttctc ... ttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTC
ttttactttcactagttcttgaaagattaataatcttttcctcttttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCATGCTGCGTGCAAAAAATCAG
tcttttcctcttttga CT-rich tract
ttgaaagattaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattgtcttagcagagaatgaatagtgcttcctttacaagtagagttttactttcactagttcttgaaagattaataatcttttcctcttttgattgcagAATGATTTACTTCAGCTGTTTCAGCCTTTTGGAGTCATAACAAAGCTTGTCATGCTGCGTGCAAAAAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - -tgcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - ctttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcttg