Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...taagaatcttccaagttgcctattttcatgggttttatggtgtgtgatttggtgatatgaactttgtatgcttatttagactggttctttcaaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG

Basic information

species Glycine max
transcript GLYMA20G28780.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28780.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os03g10340.1 (Oryza sativa), 3'ss of exon 2
taagaatcttccaagttgcctattttcatgggttttatggtgtgtgatt-tggtgatatg-aactttgtatgcttatttagactggttctttcaaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG
|  |  | |||    |    ||  |   |     |       |||   | |  | || |   |  |  | |||| |||   | |  |||||||   |   ||||||||||||| || || || ||||||||||||||||||||||| |||||||| ||    ||||||||||| || | || |||||| ||  |  | ||||
tttgtctgttcatcatgctttaggtctgtcaacctctaaacctgtagctgtcataatttatgatgtcatctgctgattctcaatatttctttcgttt--tagATTGCTTCTGAGGGCCTAAAGCATAGAGTGTTTGAGGTCTCCTTAGCTGATCTCCAGAACGATGAGGATCAGGCGTACAGGAAGATCAGACTTCGTGCTG

upper sequence: GLYMA20G28780.3 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os12g21798.1 (Oryza sativa), 3'ss of exon 2
taagaatcttccaagttgcctattttcatgggttttatggtgtgtgatttggtgatatgaactttg-tat-gcttatttagactggttctttcaa--atgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG
      |      | ||| || |||   || ||||     | ||    |  |  | || | ||| | ||| | ||  | | | | | | ||||    ||   |||||||||| || || || || ||  | |||||||||||||||||||||||||||||    ||||||||||| || | |   ||||| ||  |  | || |
----tgttcctttatttgtctgtttatctgtgtttacatatttggtcatcagcaacataatcttagatatcgtttgatgacatttgatatttccttcattttagATTGCTTCAGAGGGCCTCAAGCACCGTGTGTTTGAGGTCTCCTTGGCTGATCTTCAGAACGATGAGGATCAGGCGTACCGTAAGATCAGACTACGTGCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37994300|gb|CF806046.1|CF806046
EST:     AAGTGAAAAATGTTGGCATATCCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|13252192|gb|BG363095.1|BG363095
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|17153389|gb|BM143322.1|BM143322
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|23064192|gb|BU578965.1|BU578965
EST:     AAGTGAAAAATGTTGGTTTTTTCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|37996683|gb|CF808272.1|CF808272
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|8401864|gb|BE057498.1|BE057498
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|18039682|gb|BM307976.1|BM307976
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|105633308|gb|DW246706.1|DW246706
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAGCATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|15204252|gb|BI427020.1|BI427020
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|193339773|gb|FK303160.1|FK303160
EST:     AAGTGAAAAATGTTGGCAAAACCCACGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|120533868|gb|EH262001.1|EH262001
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|15662599|gb|BI699970.1|BI699970
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208205053|gb|GE002874.1|GE002874
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTG
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTG
EST: gi|10843781|gb|BF067038.1|BF067038
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|207715121|gb|GD695171.1|GD695171
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|192331682|gb|FK023471.1|FK023471
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|19348187|gb|BM892719.1|BM892719
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|254327575|gb|GR837184.1|GR837184
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|6566542|gb|AW234185.1|AW234185
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCACGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|9259134|gb|BE347281.1|BE347281
EST:     AAGTGATTAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|8282818|gb|BE020379.1|BE020379
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|9986835|gb|BE660943.1|BE660943
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298167007|gb|HO010446.1|HO010446
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298192921|gb|HO033355.1|HO033355
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|20811859|gb|BQ296337.1|BQ296337
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208076397|gb|GD874318.1|GD874318
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGT
EST: gi|151409731|gb|EV279539.1|EV279539
EST:     AAGCGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|26269237|gb|CA820300.1|CA820300
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|19348009|gb|BM892541.1|BM892541
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208244454|gb|GE038481.1|GE038481
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208151483|gb|GD950380.1|GD950380
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208051116|gb|GD849013.1|GD849013
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCT
EST: gi|298171621|gb|HO021213.1|HO021213
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|9204188|gb|BE330412.1|BE330412
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|193707481|gb|FK642755.1|FK642755
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGT
EST: gi|6567011|gb|AW234638.1|AW234638
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|4287756|gb|AI441235.1|AI441235
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACAT
EST: gi|298189439|gb|HO037842.1|HO037842
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208241993|gb|GE040669.1|GE040669
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTG
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTG
EST: gi|298163565|gb|HO012298.1|HO012298
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|10709127|gb|BF008851.1|BF008851
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|213605768|gb|DB968600.1|DB968600
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGGGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|23729298|gb|BU762733.1|BU762733
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|192325026|gb|FK016152.1|FK016152
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298172996|gb|HO019995.1|HO019995
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208162545|gb|GD964760.1|GD964760
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACA
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACA
EST: gi|192298966|gb|FG987711.1|FG987711
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCGGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|213618301|gb|DB973071.1|DB973071
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|208143590|gb|GD943350.1|GD943350
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTTCCTT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCT-CCTT
EST: gi|10843196|gb|BF066509.1|BF066509
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|37997385|gb|CF808974.1|CF808974
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|213601175|gb|DB964668.1|DB964668
EST:     AAGTGAAAAGTGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|10710236|gb|BF009960.1|BF009960
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|8283035|gb|BE020596.1|BE020596
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|7684691|gb|AW755339.1|AW755339
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|9203724|gb|BE329948.1|BE329948
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|13311654|gb|BG405305.1|BG405305
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298167488|gb|HO012751.1|HO012751
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|19268857|gb|BM885113.1|BM885113
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|18730645|gb|BM525997.1|BM525997
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|207707916|gb|GD692469.1|GD692469
EST:     AACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|193701806|gb|FK640456.1|FK640456
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|6913161|gb|AW394691.1|AW394691
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|7691353|gb|AW759411.1|AW759411
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|193582289|gb|FK535996.1|FK535996
EST:     AAAATGTTGGCAAAACCCTCGTCTCTCGTACTCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|18692874|gb|BM521722.1|BM521722
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298194063|gb|HO040711.1|HO040711
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGCACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|6072128|gb|AW101515.1|AW101515
EST:     AGTGAAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AGTG-AAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|207760851|gb|GD734930.1|GD734930
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCT
EST: gi|10845905|gb|BF071210.1|BF071210
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|26057787|gb|CA800701.1|CA800701
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|209713589|gb|BW681795.1|BW681795
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|10710197|gb|BF009921.1|BF009921
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|151398543|gb|EV268414.1|EV268414
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTGCCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|18690827|gb|BM519675.1|BM519675
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAG                         ATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
EST: gi|298172124|gb|HO021716.1|HO021716
EST:     AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACCCAGGGTACCAAG                         ATTGCTTCTGAAGGACTCAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT
genomic: AAGTGAAAAATGTTGGCAAAACCCTCGTCTCTCGTACGCAGGGTACCAAGgtattgtttg ... caaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttggtgatatgaactttgtatgcttatttagactggttctttcaaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG
                                       ttctttc  CT-rich tract
                          ttatttaga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taagaatcttccaagttgcctattttcatgggttttatggtgtgtgatttggtgatatgaactttgtatgcttatttagactggttctttcaaatgacagATTGCTTCTGAAGGACTTAAACATAGAGTGTTTGAGGTCTCCTTGGCTGATCTTCAAGGGGATGAGGATCATGCATTCAAGAAGATTAGGTTGAGAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCT
- - - tcttcca
- - - - - - - gttgcct
- - - - - - - - - - - - ttcatgg
- - - - - - - - - - - - - - - - - - -tggtgtg
- - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgct