1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaattatcatattaattttttttttcatccctacaactctacattttaattttgccgtctttttggggttggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAAACTATGCTTAGAAGAAGTGTGGAGATTGCACGTGAGGCACGAGAAATTT
species | Glycine max |
transcript | GLYMA20G28720.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG GCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAAEST: gi|151407441|gb|EV277256.1|EV277256
genomic: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAGgtaattatca ... tggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAA
EST: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG GCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAAEST: gi|298178797|gb|HO024532.1|HO024532
genomic: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAGgtaattatca ... tggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAA
EST: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAG GCAACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAA
genomic: TAGATTACCTCGATGCAGGAGCAAACATAATATTAACAGCATCTTATCAGgtaattatca ... tggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAA
tcatccctacaactctacattttaattttgccgtctttttggggttggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAAACTATGCTTAGAAGAAGTGTGGAGATTGCACGTGAGGCACGAGAAATTT
ttttaat putative branch site (score: 3)
tctacattttaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattatcatattaattttttttttcatccctacaactctacattttaattttgccgtctttttggggttggggtgcagGCCACTATTCAAGGTTTTGAGGCCAAAGGGTTCTCTAGAGAAGAAGGTGAAACTATGCTTAGAAGAAGTGTGGAGATTGCACGTGAGGCACGAGAAATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT