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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggttggtcactgtcgttttttgaatgagatttaatgtaatttattttattttaggaccaaaagtgtatttatatttttaggatattttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAACCTAAAAA

Basic information

species Glycine max
transcript GLYMA19G41690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196646|gb|HO041389.1|HO041389
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|193529334|gb|FK487801.1|FK487801
EST:     AACAGCTCGGAGCGAGTTTTAAGAAA-CGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACA
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACA
EST: gi|151396704|gb|EV266577.1|EV266577
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|193655953|gb|FK606625.1|FK606625
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACA
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACA
EST: gi|193530156|gb|FK486173.1|FK486173
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|7146459|gb|AW508381.1|AW508381
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|15812329|gb|BI784604.1|BI784604
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|7925424|gb|AW831389.1|AW831389
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|209699181|gb|BW664358.1|BW664358
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|193530323|gb|FK483722.1|FK483722
EST:     AACAGCTCGGAGCGAGTTTTAAGAAA-CGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACA
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACA
EST: gi|298164091|gb|HO013736.1|HO013736
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACGTAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|207750098|gb|GD726052.1|GD726052
EST:     CTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCTAAG                         GTGGACTGTGATGTACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: CTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|192330240|gb|FK019835.1|FK019835
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|208199962|gb|GD998635.1|GD998635
EST:     AACAGCTCGGAGCGATTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|192299182|gb|FG990454.1|FG990454
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|18692859|gb|BM521707.1|BM521707
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
EST: gi|193728746|gb|FK667710.1|FK667710
EST:     AACAGCTCGGAGCGAGTTTTAAGAAA-CGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACA
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACA
EST: gi|151410365|gb|EV280180.1|EV280180
EST:     AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAG                         GTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT
genomic: AACAGCTCGGAGCGAGTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGgttggttggt ... attttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattttattttaggaccaaaagtgtatttatatttttaggatattttgatagGTGGACTGTGATGAACATAAAAGCGTTTGCGGTAAATATGGGGTATCTGGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAACCTAAAAA
                    aaaagtgtatttatat  TA-rich tract