1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
taaaagcttctcctgttaactcactgtttgaacaattttctatggatttaagttgattgaatgtttcttatcttttgtgtttcaggTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAAG
species | Glycine max |
transcript | GLYMA18G53810.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGG TGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCEST: gi|209720228|gb|BW674568.1|BW674568
genomic: GTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGtaaaagcttc ... gtgtttcaggTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTC
EST: TCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGG TGGCATTGAAATTTGAGCATAGGAEST: gi|9985886|gb|BE660113.1|BE660113
genomic: TCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGtaaaagcttc ... gtgtttcaggTGGCATTGAAATTTGAGCATAGGA
EST: TCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGG TGGCATTGAAATTTTGAGCATAGGAACNAGCAAAGGCTTGTAAATTAT
genomic: TCGAGTCACTGGTGGTAACGATCGGACCACTGGTGCTGGTGCCACTGAGGtaaaagcttc ... gtgtttcaggTGGCATTGAAATTT-GAGCATAGGAAC-AGCAAAGGCT-GTAA-TTAT
acaattttctatggatttaagttgattgaatgtttcttatcttttgtgtttcaggTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAAG
agttgat putative branch site (score: 5)
tttcttatcttttgt putative PPT
atttaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagcttctcctgttaactcactgtttgaacaattttctatggatttaagttgattgaatgtttcttatcttttgtgtttcaggTGGCATTGAAATTTGAGCATAGGAACAGCAAAGGCTGTAATTATGGCCCTCCTTACGAGTGGCAAGTATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG