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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taaacacggagactttgatcttctaatagaatggaggaattatcaacttatactaaaaacttaaaacatacattttctttttgttttctattcccttttacttgttagacatgtctaacttgttttttcaaatatgttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATTTCAAACAATGCCAAGGATCTTGTTCGT

Basic information

species Glycine max
transcript GLYMA18G11030.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13563437|gb|BG551666.1|BG551666
EST:     GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA                         GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
EST: gi|14011541|gb|BG726463.1|BG726463
EST:     AGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA                         GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
EST: gi|19935326|gb|BQ080356.1|BQ080356
EST:     GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGA                         GACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA
genomic: GGAGTCATATTGTATATCTTACTGAGTGGAGTCCCTCCATTTTGGGCCGGtaaacacgga ... gttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcccttttacttgttagacatgtctaacttgttttttcaaatatgttctgtagaGACTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCTAACATTTCAAACAATGCCAAGGATCTTGTTCGT
                      gtctaac  putative branch site (score: 2)
                             ttgttttttcaaatat  TA-rich tract