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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaggaagttgcattttatgcctagggggttcctttgtacttgattataacatgcatatatgttgcaatcatgtgatctatatgtgtgtgtgtgtggcttcactccaatgtgacctttgattcgagttgcttgatagagatgcagGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCCAATGCTCTTCAAGGATCAGATTTAGTGTTTGTAACTGC

Basic information

species Glycine max
transcript GLYMA18G10030.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10030.1 (Glycine max), 3'ss of exon 2
lower sequence: LOC_Os04g56970.1 (Oryza sativa), 3'ss of exon 2
gtcaggaagttgcattttatgcctagggggttcctttgtacttgattataacatgcatatatgttgca-atcatgtgatctatatgtgtgtgtgtgtggcttcactccaatgtgacctttgattcgagttgcttgatagagatgcagGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCCAATGCTCTTCAAGGATCAGATTTAGTGTTTGTAACTGC
                                              |   | ||| ||   | |  || ||  |  |  |   |  | |   |         ||    |||||   ||    |      |   |   |   || ||||||||||||| |||||   |||||| || |||||||||||||||||||||||||| || |||||||| ||  | |  || ||  | || ||  |||| ||
--------------------------------------------tgtgggaaatgtatgagtatgacatattttaagggcagcaaatttcgattcaaaatagcaa---aatgttgactgcagtcgctaatttattccatgcatacagGTACTGGTGGAAATCCTAATTTGGGAGAGCAAGCTGCTGAGGAATCAAAAGAAGCCATAGCCAATGCCCTGAAGGATTCTGACCTTGTCTTCATAACGGC

upper sequence: GLYMA18G10030.1 (Glycine max), 3'ss of exon 2
lower sequence: AT5G55280.1 (Arabidopsis thaliana), 3'ss of exon 2
gtcaggaagttgcattttatgcctagggggttcctttgtacttgattataacatgcatatatgt-tgcaatcatgtgatctatatgtgtgtgtgtgtggcttcactccaat--gtgacctttgattcgagttgcttgatagagatgcagGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCCAATGCTCTTCAAGGATCAGATTTAGTGTTTGTAACTGC
                                                     |   || |  | | | || || || | || |||| |||||| ||     ||||  ||      | |||   |    ||| |||| |  |     ||| |||||||| || || ||| | || ||||||||||| || ||||||||||| || ||||| ||||||||| ||||||||||  | || ||  |||||||
----------------------------------------------------gttagtagagttatactattatttggtatagatgt-tgtgtgagttttggcacttaaagtaacaaacttgcgtctctgttacttgttttaa---tagGCACTGGTGGAAACCCGCTTCTTGGAGAACAAGCTGCAGAAGAATCAAAAGATGCAATTGCTAATGCTCTTAAAGGATCAGACCTTGTTTTCATAACTGC

upper sequence: GLYMA18G10030.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv19s0090g01320.t01 (Vitis vinifera), 3'ss of exon 2
gtcaggaagttgcattttatgcctagggggttcctttgtacttgattataacatgcatatatgttgcaatcatgtgatctatatgtgtgtgtgtgtggcttcactccaatgtgacctttgattcgagttgcttgatagagatgcagGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCCAATGCTCTTCAAGGATCAGATTTAGTGTTTGTAACTGC
                                       ||||   |||     | |||   | |||  |  |||  ||| ||||||| || |       |   |  | |||  ||||||| || |    ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||  | || |||||| | |||||| |||| ||
---------------------------------------acttttatatgggtggtata---gctgc--ttttgttttct-tatgtgt-tgaggaccttgtggttgtattgtatcctttgactcaaaccacttaatagagatgcagGTACGGGTGGGAATCCACTTTTGGGGGAACAGGCTGCTGAGGAATCAAAGGAAGCCATTGCAAATGCTCTCAAGGGTTCAGATCTTGTGTTTATAACAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgtggcttcactccaatgtgacctttgattcgagttgcttgatagagatgcagGTACTGGTGGGAATCCACTTTTGGGGGAACAAGCTGCTGAGGAATCAAAAGAAGCTATTGCCAATGCTCTTCAAGGATCAGATTTAGTGTTTGTAACTGC
                                      gcttgat  putative branch site (score: 5)
                         tttgatt  TA-rich tract