1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taaaagtagtacctaggatgaattctaattggttgtgtaaaaacttttacagtgacaatggatgcctattaaactcttgctttatatatttttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCAATTTTGTTTTGGATGATGGAACAGGACGCATCAAATGTCGAAGATG
species | Glycine max |
transcript | GLYMA17G29730.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAAT GTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCEST: gi|51336058|gb|CO979924.1|CO979924
genomic: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATgtatgcccct ... tttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
EST: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAAT GTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCEST: gi|9204441|gb|BE330665.1|BE330665
genomic: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATgtatgcccct ... tttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
EST: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAAT GTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCEST: gi|298199423|gb|HO042786.1|HO042786
genomic: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATgtatgcccct ... tttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
EST: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAAT GTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCEST: gi|51345216|gb|CO985949.1|CO985949
genomic: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATgtatgcccct ... tttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
EST: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAAT GTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
genomic: CCGGTGATGAAAAGTCGAATTTCGTGATCAACGGTGTAGATCTGAACAATgtatgcccct ... tttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTC
tttacagtgacaatggatgcctattaaactcttgctttatatatttttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCAATTTTGTTTTGGATGATGGAACAGGACGCATCAAATGTCGAAGATG
tattttt CT-rich tract
tattaaactcttgctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaaagtagtacctaggatgaattctaattggttgtgtaaaaacttttacagtgacaatggatgcctattaaactcttgctttatatatttttggttcagGTAACACTGCTTGGGATGGTGTTTGAGAAAGTTGAGAGAAATACTGATGTCAATTTTGTTTTGGATGATGGAACAGGACGCATCAAATGTCGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - tgaattc
- - - - - - - - - - - - - - - ggttgtg
- - - - - - - - - - - - - - - - - - -taaaaac
- - - - - - - - - - - - - - - - - - - - - - - -tacagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggatgcc