1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcactatctgtaattgttgtaaatacctcttgcatttaattcatggccatggatgcttaaacactgattgatgtattggatggtgtctattttggatcagAGTCTTTAGAGAGTATTTTGGGTGGAAAGATGAGGAATAATAACTGTAACTTTGCTGAATGGCAGCCATATGCTCACAGTGGTTGAATATAGTACGTCAG
species | Glycine max |
transcript | GLYMA08G19520.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGA AGTCTTTAGAGEST: gi|192333780|gb|FK025503.1|FK025503
genomic: ATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGAgttagtagtc ... tttggatcagAGTCTTTAGAG
EST: ATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGA AGTCTTTAGAGAGTATTTTGGGTGGAAAGATGAGGAATAATAACTGTAACT
genomic: ATCCGGCTTGGGAGTTTTGATCGACTTGATTTTAACTCCAACTTTTAAGAgttagtagtc ... tttggatcagAGTCTTTAGAGAGTATTTTGGGTGGAAAGATGAGGAATAATAACTGTAACT
gccatggatgcttaaacactgattgatgtattggatggtgtctattttggatcagAGTCTTTAGAGAGTATTTTGGGTGGAAAGATGAGGAATAATAACTGTAACTTTGCTGAATGGCAGCCATATGCTCACAGTGGTTGAATATAGTACGTCAG
tctatttt CT-rich tract
tctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcactatctgtaattgttgtaaatacctcttgcatttaattcatggccatggatgcttaaacactgattgatgtattggatggtgtctattttggatcagAGTCTTTAGAGAGTATTTTGGGTGGAAAGATGAGGAATAATAACTGTAACTTTGCTGAATGGCAGCCATATGCTCACAGTGGTTGAATATAGTACGTCAG
- -ctatctg
- - - - - - - tgttgta
- - - - - - - - - - - - - ctcttgc
- - - - - - - - - - - - - - - - - - - - -catggcc
- - - - - - - - - - - - - - - - - - - - - - - - - ggatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggtg