1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ctttataattgtttgaaagtcaaaagttacttgcataattcaagtagtccctcttcatcaaaagtcctctgtgcttgatatgtgttgtgtataaatgtagGAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATCACGTACATATTGTGATAATTATTCAGATATAGATTCAAGTAGCGTTAGT
species | Glycine max |
transcript | GLYMA07G34030.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCTGGTTACTCACCCTTCTTCGGTATCTACTCATCCATCTACCTTCAG GAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATCEST: gi|193358776|gb|FK328454.1|FK328454
genomic: CATCTGG-TACTCACCCTTCTTCGGTATCTACTCATCCATCTACCTTCAGgtaatcatat ... ataaatgtagGAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATC
EST: TCATCTGGTACTCACCCTTCTTCGGTATCTACTCATCCATCTACCTTCAG GAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATC
genomic: TCATCTGGTACTCACCCTTCTTCGGTATCTACTCATCCATCTACCTTCAGgtaatcatat ... ataaatgtagGAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATC
agtccctcttcatcaaaagtcctctgtgcttgatatgtgttgtgtataaatgtagGAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATCACGTACATATTGTGATAATTATTCAGATATAGATTCAAGTAGCGTTAGT
gcttgat putative branch site (score: 5)
tataaatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttataattgtttgaaagtcaaaagttacttgcataattcaagtagtccctcttcatcaaaagtcctctgtgcttgatatgtgttgtgtataaatgtagGAGTGACAAAGAGGGAACGGATGATTCTAGGAAGCACCTTCTCAGCCCATCACGTACATATTGTGATAATTATTCAGATATAGATTCAAGTAGCGTTAGT
- - - - ttgtttg
- - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgtg