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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtctttatttatatggatcatgctttctcaatgagaactctgtcatgaatacttaaactgatggtacattgctctaatttcttcaagtttaattttgtggtgtatacttgatagccaattgttggtattcaatctctttgatgctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAGTCTATGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATC

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 18
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 18
gtaatgtctttatttatatggatcatgctttctcaatgagaactctgtcatgaatacttaaactgatggtacattgctctaatttcttcaagtttaattttgtggtgtatacttgatagccaattgttggtattcaatctctttgatgctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAGTCTATGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATC
                                                      |  ||   ||| |      |||      ||| |     || |   || || | | |  ||  |       | ||     || || |||| | |  ||||  ||||| |||||||||||||||  |||||||||  | |||||||| || |||||||| || ||||||| || |||||| |  | ||||||  |  |||| ||||
-----------------------------------------------------gttatttttctgttttcgtcttgtgactctttatcatccttaatccttatgatttgtcatttcttttgggctttt--ctatctatttcttagttatttttctcagGTCCTTCCTGTTTTCTTGAAAGTTCTTCCTCTGAAAGAAGATCGTGAGGAGTCCATTGCTGTCTTTACCTGTGTATGTAATCTTGTTGTGGCATCTAATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208031714|gb|GD831236.1|GD831236
EST:     CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAG                         GTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG
genomic: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAGgtaatgtctt ... ctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG
EST: gi|22521906|gb|BU080717.1|BU080717
EST:     CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAG                         GTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG
genomic: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAGgtaatgtctt ... ctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG
EST: gi|208247297|gb|GE048941.1|GE048941
EST:     CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCTCATTAAATCAG                         GTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG
genomic: CCGTGGCAAGGATGATCATGGTACACCCTGAATCTATCCCATTAAATCAGgtaatgtctt ... ctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtgtatacttgatagccaattgttggtattcaatctctttgatgctttttacagGTTCTTCCTGTTTTCTTGCGAGTTCTTCCATTAAAAGAAGACCGCGAGGAGTCTATGGCTGTCTATAGCTGTGTCTCCACTCTTGTATTCTCATCCAATC
                                     ctttgat  putative branch site (score: 5)
                                           tgcttttt  CT-rich tract
                           tattcaat  TA-rich tract