1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatatcttctcccccttgtgcttctttataaattttttaaatcaacttgatatatcttttagaaacttgagtttggatatcttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTCCCTTCTATGCACTTATCCCCTGAGGATGTACGATGGATG
species | Glycine max |
transcript | GLYMA17G01850.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GTTATCTAGGCCGTCAAACCCTT GTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTCEST: gi|193401455|gb|FK369278.1|FK369278
genomic: GTTATCTAGGCCGTCAAACCCTTgtatatcttc ... ttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTC
EST: ATTTCCAAATTGGAGGCATTGTCCACCGTTATCTAGGCCGTCAAACCCTT GTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTAGTEST: gi|193420013|gb|FK385451.1|FK385451
genomic: ATTTCCAAATTGGAGGCATTGTCCACCGTTATCTAGGCCGTCAAACCCTTgtatatcttc ... ttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACT-GT
EST: ATTTCCAAATTGGAGGCATTGTCCACCGTTATCTAGGCCGTCAAACCCTT GTTATGGAAGATGATCAAGAAATTGCTTCATATATGTT-CGTAGGACTGTC
genomic: ATTTCCAAATTGGAGGCATTGTCCACCGTTATCTAGGCCGTCAAACCCTTgtatatcttc ... ttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTC
ttaaatcaacttgatatatcttttagaaacttgagtttggatatcttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTCCCTTCTATGCACTTATCCCCTGAGGATGTACGATGGATG
acttgat putative branch site (score: 5)
tatctttt putative PPT
atatatcttttagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatcttctcccccttgtgcttctttataaattttttaaatcaacttgatatatcttttagaaacttgagtttggatatcttttatgtagGTTATGGAAGATGATCAAGAAATTGCTTCATATATGTTTCGTAGGACTGTCCCTTCTATGCACTTATCCCCTGAGGATGTACGATGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA