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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taagggaagggttgatgaatgaagtagttgattttgtgaagtcaataccgagactgatatcttcattttggttctgtttatgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTTACGGGCCAAAGTATTTTGTGTCTGAAATTTATA

Basic information

species Glycine max
transcript GLYMA18G53810.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196558|gb|HO041301.1|HO041301
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|192314525|gb|FK008439.1|FK008439
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|214008638|gb|DB986773.1|DB986773
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|254340791|gb|GR854519.1|GR854519
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|58022100|gb|CX708841.1|CX708841
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|10709803|gb|BF009527.1|BF009527
EST:     ACCCAGGAAACTCTGCGTACATGCT-AATTTCCAAGCACACATTTTAAGG                         AAAAATGGTCCAAAGACCTTTACCTTGCTTGTTTG
genomic: ACCCAGGAAACTCTGCGTACAT-CTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTG
EST: gi|192314524|gb|FK008438.1|FK008438
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|254340792|gb|GR854520.1|GR854520
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCCTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|209720229|gb|BW674569.1|BW674569
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
EST: gi|13252748|gb|BG363651.1|BG363651
EST:     AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGG                         AAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG
genomic: AACCCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGtaagggaagg ... tgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaagtcaataccgagactgatatcttcattttggttctgtttatgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTTACGGGCCAAAGTATTTTGTGTCTGAAATTTATA
                gactgat  putative branch site (score: 3)
                                             tgttctc  putative PPT
                          ttcatttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taagggaagggttgatgaatgaagtagttgattttgtgaagtcaataccgagactgatatcttcattttggttctgtttatgttctcaggAAAAATGGTCAAAAAACCTTTACCTTGCTTGTTTGTGCTATGGGCGCACAGTATGCTGATTTCCTTTACGGGCCAAAGTATTTTGTGTCTGAAATTTATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT