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...aaagtagtagagcttctatagaagttaagaggtaaaaaagattgaaccaaacactaccatagccttttcttgctaacaaattcatttgtttgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATGCTGGATTGCTGGCAGTGAGGATGTTGGGTGTTGCCAATGATAATCTTC
species | Glycine max |
transcript | GLYMA20G36930.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGCGTGCTTCTACCTTGGATGGGATTGATTCACTCTTGTCAATTGTCCAG ATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATEST: gi|16106300|gb|BI894040.1|BI894040
genomic: TGCGTGCTTCTACCTTGGATGGGATTGATTCACTCTTGTCAATTGTCCAGgtatgttggt ... tgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAAT
EST: TGCGTGCTTCTACCTTGGATGGGATTGATTCACTCTTGTCAATTGTCCAG ATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATEST: gi|22931981|gb|BU549120.1|BU549120
genomic: TGCGTGCTTCTACCTTGGATGGGATTGATTCACTCTTGTCAATTGTCCAGgtatgttggt ... tgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAAT
EST: GATGGGATTGATTCACTCTTGTCAATTGTCCAG ATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAAT
genomic: GATGGGATTGATTCACTCTTGTCAATTGTCCAGgtatgttggt ... tgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAAT
accaaacactaccatagccttttcttgctaacaaattcatttgtttgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATGCTGGATTGCTGGCAGTGAGGATGTTGGGTGTTGCCAATGATAATCTTC
tgctaac putative branch site (score: 1)
tttgttt putative PPT
taacaaattcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagtagtagagcttctatagaagttaagaggtaaaaaagattgaaccaaacactaccatagccttttcttgctaacaaattcatttgtttgctgtgcagATGCCGAGAGGTGTCCCTGTTGCCACTGTTGCAGTTAATAATGCAACTAATGCTGGATTGCTGGCAGTGAGGATGTTGGGTGTTGCCAATGATAATCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - -gcttcta
- - - - - - - - - - - - - - - - taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - ccaaaca