1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgagagtgcacatttacactgcatgcatgttggaattaatttgtataccttcttttctggttgtatgctggtcataaactttttcacctttgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGAACATAACCCAAGGTGCTGACACACATGAATACATCAATTCAAATCTCA
species | Glycine max |
transcript | GLYMA20G30820.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAAEST: gi|9264616|gb|BE352763.1|BE352763
genomic: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAA
EST: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGEST: gi|24206133|gb|BU965386.1|BU965386
genomic: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCG
EST: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGEST: gi|193653705|gb|FK595587.1|FK595587
genomic: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCG
EST: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAAEST: gi|193605279|gb|FK557237.1|FK557237
genomic: TTCAGATGGGAGATGGTTTTCAAGCAGAATTGGCTGTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAA
EST: AGAATTGGCTGTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGEST: gi|17023900|gb|BM094934.1|BM094934
genomic: AGAATTGGCTGTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCG
EST: GTACACTTTCTGAAG GGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCG
genomic: GTACACTTTCTGAAGgtgtgtttca ... tgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCG
taccttcttttctggttgtatgctggtcataaactttttcacctttgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGAACATAACCCAAGGTGCTGACACACATGAATACATCAATTCAAATCTCA
ctttttcaccttt CT-rich tract
ataaacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagagtgcacatttacactgcatgcatgttggaattaatttgtataccttcttttctggttgtatgctggtcataaactttttcacctttgaggtgtagGGAGCCATGTTGTTTGAGAAACGATTAGAGGTCAACTTCTCCAAGCATCCGAACATAACCCAAGGTGCTGACACACATGAATACATCAATTCAAATCTCA
- - - tgcacat
- - - - - - - - cactgca
- - - - - - - - - - - - gcatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacctt