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...ttataattttagaaaataaatgtgttttttctttctttctttttcctgctacatcctgtttttccaacccccaaattattgaggtttttgcattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATACTACTTTGCAACACTTATACTTTTTATTTAAAATAACAAAACATGTAA
species | Glycine max |
transcript | GLYMA17G00910.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCAT GCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATEST: gi|254323255|gb|GR840060.1|GR840060
genomic: GCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATgtaagccttt ... cattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCAT
EST: GCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCAT GCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATEST: gi|193353624|gb|FK320274.1|FK320274
genomic: GCCATCTGCAATGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATgtaagccttt ... cattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCAT
EST: GCATCTGCTCTTGTTCTTGAGCTCAT GCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCAT
genomic: GCATCTGCTCTTGTTCTTGAGCTCATgtaagccttt ... cattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCAT
ctgctacatcctgtttttccaacccccaaattattgaggtttttgcattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATACTACTTTGCAACACTTATACTTTTTATTTAAAATAACAAAACATGTAA
tttttgc CT-rich tract
aaattattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttataattttagaaaataaatgtgttttttctttctttctttttcctgctacatcctgtttttccaacccccaaattattgaggtttttgcattttgcagGCCGGTTGCTGTGGGACGTTCTTTATTATGACAAAGATCTCCTTACATCATACTACTTTGCAACACTTATACTTTTTATTTAAAATAACAAAACATGTAA
- - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - -tcctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccaaa