Sequence
atgc intronic sequence ATGC exonic sequencegtctcatttttgtctgtttgtattcattcttgggataaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
Basic information
species | Glycine max |
transcript | GLYMA10G44110.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G55020.1 (Arabidopsis thaliana), 3'ss of exon 14
--------gtctcatttttgtctgtttgtattcattcttgggataaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
| | |||||| | ||| || || | | | | | ||| || | || | | ||| ||||||||||||||||||||||||| || ||||| || || ||||| || | ||||||||||| ||||||| || || ||||||||||| |||||| | |
gtttgcatatgcatgatcaatctgttcttcttcttttttcgtttgtgactgagaa---agattctgagattaattgatatgtatga-agGTCTTGATGCGGGTGGAGCAAGAACAGAAGGTAACAGAAGATGCACGAATATTTGCTGAGCAGGATGCAGAAGCGCAGAGATATGCTGCTCAAGTCTTGC
upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 14
lower sequence: AT2G39280.1 (Arabidopsis thaliana), 3'ss of exon 14
gtctcatttttgtctgtttgtattcattc-ttgggat--aaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
| | |||| | || | |||| || ||| || | | || | || ||| ||| ||| |||||||||||||| |||||||||| || || || || || ||||| || || |||||||||| |||||||| | || ||||||||||| |||| ||||
---------gtttgcatttgcactcttctattggaattcaaagtaaggtaattctaagaccacttgaaattta-----tga-agGTCTTGATGCGGATGGAGCAAGAACATAAAGTAACAGAAGATGCACGGAGACTTGCTGAGCAGGATGCAGCAACGCAGAGATATGCTGCTGAAGTGCTTC
upper sequence: GLYMA10G44110.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g03420.t01 (Vitis vinifera), 3'ss of exon 14
-------------------------gtctcatttttgtctg----tttgtattcattcttgggataaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
| ||||||| || | |||||| ||||| || | || | | ||| || | |||||| | |||||| ||| ||||||| |||||||| |||||| | ||||| |||||||| |||||||||||||||||||| || || || ||||||||||| ||||| ||||
gttgcaatttttatgccattccaagggctcatttctgaaagatgctttgtaccttatcttgttatgggct-tgtcatagtaattatgatatca---tttgtt--ttatagGTATTGGTGCGGGTAGAGCAAGAACAAAAGTTAACTGAAGATGCTCGCAGGTTTGCTGAGCAAGATGCTGCAGCCCAGAGATATGCTGCTCAAGTGCTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcttgggataaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
tttttgtt CT-rich tract
ataaaatatgcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtctcatttttgtctgtttgtattcattcttgggataaaatatgctttctcgtatgtgacatgagtttttgttgctgatagGTCTTGATGCGGGTGGAGCAAGAGCAAAAGGTGACTGAGGATGCTCGTAGGTTTGCTGAGCAAGATGCAGCCGCACAAAGATATGCTGCGCAAGTCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC