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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaacatttactctctgattttgtatatggtaatgataagacagttcattttatctgtataacctattgaggctgtttgattcctcagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCATGCACTAGTGTGGCTGACATCATTAGAGATTT

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os03g15540.1 (Oryza sativa), 3'ss of exon 2
gtgagaacatttactctctgattttgtatatggtaatgataagacagttc-attttatctgtataacc--tattgaggctgtttgattcctcagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCATGCACTAGTGTGGCTGACATCATTAGAGATTT
  |   |   | |   | |    |  ||| |  | ||  |||| || ||   |  |   | |  || |  || |     | |||   |   ||||||| || ||||| ||||| |||||||| |||   || ||||||||||| ||||| ||||||||||| ||||| ||  | || |||||| | || |||| 
--gtagatgctaa---tatagcatgctatgtttttattttaagtcaattttgtcctgcatattgaaacaatactctatttctttccatttgcagATACAGTAATGAACATTTATATCAAGACCATGAGAGAGGATGATGACAAAGAAGTAGTTGCTCAAGCTTGCACGAGCTTAGCAGACATCGTGAGGGATTG

upper sequence: GLYMA08G19960.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv12s0034g02160.t01 (Vitis vinifera), 3'ss of exon 13
----------------gtgagaacatttactctctgattttgtatatggtaatgataagacagttcattttatctgtataacctattgaggctgtttgattcct-cagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCATGCACTAGTGTGGCTGACATCATTAGAGATTT
                  | ||| | |   | ||  |||   |   | |   || | |  | | |   ||  |      || | | | | ||| |||  ||  | |||||||||||||||||||||| |||||||| |||   ||||||||||| |||||||| ||||||||||| || |  ||    ||||| || || |  |||||
gtacaatgttacacaaaagtgaaaaatatttttcctattccatg-gttgccttgcttaacctgatttattggtaatgggaatccaattatgctctttactttatgcagATACTGTGATGAATATTTATATCAAGACGATGACAGAAGATGATGATAAGGAAGTTGTTGCTCAAGCTTGTATGAGCACAGCTGAGATTATCAAGGATTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208080067|gb|GD878453.1|GD878453
EST:     GAAGGGGCTGCTAAAGCAAAAGAACTTCTTG                         ATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGG
genomic: GAAGGGGCTGCTAAAGCAAAAGAACTTCTTGgtgagaacat ... gattcctcagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGG
EST: gi|207761562|gb|GD731553.1|GD731553
EST:     GAAGGGGCTGCTAAAGCAAAAGAACTTCTTG                         ATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGG
genomic: GAAGGGGCTGCTAAAGCAAAAGAACTTCTTGgtgagaacat ... gattcctcagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataagacagttcattttatctgtataacctattgaggctgtttgattcctcagATACTGTGATGAATATTTACATCAAGACTATGGTTGAAGATGATGACAAGGAAGTGGTTGCTCAAGCATGCACTAGTGTGGCTGACATCATTAGAGATTT
                                               ttcctc  CT-rich tract
              attttatctgtataa  TA-rich tract