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...atgaattgtaacaagtgtggttgatgctgagaaattttcaagcaactaatttattatggataaattgcaatgtcacttggcatgtcaatgtgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAGGAGATTTCAACAGTCTGTTCCGTAAAATTGTAACGGCTGCTGAGCATC
species | Glycine max |
transcript | GLYMA20G37730.2 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGG GTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAEST: gi|5606725|gb|AI900823.1|AI900823
genomic: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGGgtatttttat ... tgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTA
EST: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGG GTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAEST: gi|254338165|gb|GR845521.1|GR845521
genomic: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGGgtatttttat ... tgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTA
EST: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGG GTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAEST: gi|254344505|gb|GR851202.1|GR851202
genomic: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGGgtatttttat ... tgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTA
EST: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGG GTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTA
genomic: CTAAAGATGATCTGGATTCATTTCCAATGGCTATACAAGAGTCAACTAGGgtatttttat ... tgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTA
ctaatttattatggataaattgcaatgtcacttggcatgtcaatgtgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAGGAGATTTCAACAGTCTGTTCCGTAAAATTGTAACGGCTGCTGAGCATC
aactaat putative branch site (score: 2)
ttattatggataaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgaattgtaacaagtgtggttgatgctgagaaattttcaagcaactaatttattatggataaattgcaatgtcacttggcatgtcaatgtgttttgtagGTTAGTCAAGATATGGGAGTTGAGGCTCCTATACCTATCAGTGTGAAATTAGGAGATTTCAACAGTCTGTTCCGTAAAATTGTAACGGCTGCTGAGCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - gtggttg
- - - - - - - - - - - - tgctgag
- - - - - - - - - - - - - - - - - - ttcaagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgtc