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...cactggttaaagtggtgacttgtcaattgtattttaaattaactcattacatgcttggaaaaatttgtttgtataatagctgacaagatgttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCTAGCCATGGAGAAGATACCGGCTTTGAGGTGCCTTGCCTGATAGTTGCA
species | Glycine max |
transcript | GLYMA20G37730.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|193376741|gb|FK340936.1|FK340936
genomic: CTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|5606725|gb|AI900823.1|AI900823
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|254338165|gb|GR845521.1|GR845521
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|193313676|gb|FK280527.1|FK280527
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|12773933|gb|BG238860.1|BG238860
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCEST: gi|254344505|gb|GR851202.1|GR851202
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCEST: gi|298168984|gb|HO020288.1|HO020288
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGC
EST: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAG GTCTGATGAATCCTCATGGAGAACATCGTCCGAACTC
genomic: AATAAGGAGTCTTTGGCCTCATGTGACATTGCAGTTTTTGTTCATGACAGgtgaccactg ... ttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTC
attacatgcttggaaaaatttgtttgtataatagctgacaagatgttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCTAGCCATGGAGAAGATACCGGCTTTGAGGTGCCTTGCCTGATAGTTGCA
agctgac putative branch site (score: 3)
ttcatttc putative PPT
aaaaatttgtttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactggttaaagtggtgacttgtcaattgtattttaaattaactcattacatgcttggaaaaatttgtttgtataatagctgacaagatgttcatttcagGTCTGATGAATCCTCATGGAGAACATCGTCCGAACTCTTGGTTGAAATTGCTAGCCATGGAGAAGATACCGGCTTTGAGGTGCCTTGCCTGATAGTTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-actggtt
- - - - - agtggtg
- - - - - - - - - cttgtca
- - - - - - - - - - - - - - - - - - - - - - - - acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgaca