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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaagCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATT

Basic information

species Glycine max
transcript GLYMA18G11950.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11950.1 (Glycine max), 3'ss of exon 11
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 3'ss of exon 11
gtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattatgaagCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATT
                                                                                          || | ||| || | ||  |     | ||||| ||    |     |  ||    || |||||||  |    ||   |   || ||  |  | |  ||| ||| || || ||||||||  |||||||| | || || || |||||||| ||||| ||||| || || ||||||||||| | ||||||||| ||||| |||| ||||
-----------------------------------------------------------------------------------------gtaaacaagatatatttcctgtattatgattaaattaaaaagctac--tagttttgttctctttaac----tgatgtgaggacaatatgttttcctttgattttgcagTTATGTTCACAGAGTTGGTAGAACAGCTAGGGCTGGAAGGGAAGGTTATGCTGTAACGTTTGTGACTGATAGTGACCGATCCCTTTTGAAAGTCATT

upper sequence: GLYMA18G11950.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 11
gtacaatctatgatccatattggtagtaactctgcttgaaatgttgcgtgttattgacttcctgcattttttgtcactttccttcattgctacataagttacaatttatcatacacgattacatgttgatctcgccttaaacatgatctctttctctctatggattcctgataactttatctttttttattat-gaagCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATT
                                                                                                  || ||  ||||   | | || |      || ||   |  |   |||  |    |  |   |||   |   |  |   ||  | | || | ||| | | || || |||||||| ||||||||||| ||||| ||||| |||||||||||||| || || ||||| ||||| |||||  |||| || || ||| | || 
------------------------------------------------------------------------------------------------gctttcagcttatataataagagtgttcaatggtcatactctgtgcat--ttgagtggttcttatatttctttatttttttcttttgttctcatttttgcagTTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatctctttctctctatggattcctgataactttatctttttttattatgaagCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATT
                          tgataac  putative branch site (score: 2)
                                ctttatctttttttat  CT-rich tract
                          tgataactttatcttt  TA-rich tract