1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aagctcttgttaacaaatattttgtatattatttacaataaataaccctattaaaatatctaactaatgactccatttctgtggtgtttacgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGCGCACTCCTTGCTATACATGACTACATTTCGC
species | Glycine max |
transcript | GLYMA13G26280.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAEST: gi|192329072|gb|FK021425.1|FK021425
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAAGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAEST: gi|192329073|gb|FK021426.1|FK021426
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAEST: gi|9902977|gb|BE611945.1|BE611945
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAEST: gi|254339872|gb|GR857997.1|GR857997
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAEST: gi|10843100|gb|BF067155.1|BF067155
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAAGGTTCATTCAACAG GCTGACAATCTTCGCCAGCTAACTCTTCAACACATGCACCGTATACTGACAEST: gi|14991366|gb|BI317039.1|BI317039
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
EST: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAG GCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
genomic: TGGCCATGGCCATGGGCAAGCTAGGGACACTAGAAGGGTTCATTCAACAGgtacattctt ... cgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACA
ccctattaaaatatctaactaatgactccatttctgtggtgtttacgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGCGCACTCCTTGCTATACATGACTACATTTCGC
aactaat putative branch site (score: 2)
ttaaaatatctaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctcttgttaacaaatattttgtatattatttacaataaataaccctattaaaatatctaactaatgactccatttctgtggtgtttacgattataagGCTGACAATCTTCGCCAGCAAACTCTTCAACAAATGCACCGTATACTGACAACTCGCCAATCAGCTCGCGCACTCCTTGCTATACATGACTACATTTCGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - -aaataacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggtgt