1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...gtccttctacattacttgggttctcaaataaatacctcagtttttttcatacatttatattgccattgattgctgatttgtttttttattttaactgcagATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
species | Glycine max |
transcript | GLYMA08G19960.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAAC ATATTTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAATEST: gi|13477942|gb|BG507613.1|BG507613
genomic: CAGTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAACgtaaggggaa ... ttaactgcagATA-TTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
EST: CAGTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAAC ATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAATEST: gi|207761562|gb|GD731553.1|GD731553
genomic: CAGTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAACgtaaggggaa ... ttaactgcagATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
EST: AGTTTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAAC ATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
genomic: AG-TTATTTCCATGAAGACGTTAGACTTCAGGCTATCATTTCTTTAAAACgtaaggggaa ... ttaactgcagATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
ttcatacatttatattgccattgattgctgatttgtttttttattttaactgcagATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
ttttaac putative branch site (score: 2)
tttgtttttttatttt CT-rich tract
tgatttgtttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttctacattacttgggttctcaaataaatacctcagtttttttcatacatttatattgccattgattgctgatttgtttttttattttaactgcagATATTTTAACTGCGGCCCATGGAATCTTCCAAAGTCAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- ccttcta
- - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - cctcagt
- - - - - - - - - - - - - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctga