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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtagttgtttactgaatgtttataattataacttttgtttttcctgctgatttgtattttttgtcatacaaattccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA

Basic information

species Glycine max
transcript GLYMA08G19570.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 11
lower sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtagttgtttactgaatgtttataattataacttttgtttttcctgctgatttgtattttttgtca-tacaaat-tccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA
     | ||| ||  ||   || || || ||     | ||| ||||        || || | ||| |||| ||||  | |   ||||||| ||||| || ||| | ||||||||| ||||| ||||||||||| |||| ||||||||| ||||  |||||||  |    ||        |     |  
---gtttgttcttctctttttgatt-tagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT

upper sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
gtatgtagttgtttactgaatgtttataattataacttttgtttttcctgctgatttgtattttttgtcatacaaatt--ccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA
    ||   |  |||||  ||       |  || | |    | || | |   |||| |   || |   || |||  ||  |||||||||||||||| | |||| ||||||||||| | ||||||||||||||||  ||| |||||||||| ||||| |||||  | |  ||  ||   ||   | | |
----gtgacttattact--atcacacggagcatta-tccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208059742|gb|GD858640.1|GD858640
EST:     TGCAACAATGCGAGCTGAAACTTCATAGACGTGGTATAGCACAAATGAGG                         ATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGT
genomic: TGCAACAATGCGAGCTG-AACTTCATAGACGTGGTATAGCACAAATGAGGgtatgtagtt ... ttccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataacttttgtttttcctgctgatttgtattttttgtcatacaaattccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA
                    tgatttgtatttttt  TA-rich tract