Sequence
atgc intronic sequence ATGC exonic sequence...atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
Basic information
species | Glycine max |
transcript | GLYMA07G34030.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G34030.1 (Glycine max), 3'ss of exon 12
lower sequence: AT1G71010.1 (Arabidopsis thaliana), 3'ss of exon 10
atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
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----------gtaagtgttttcattacccccaattcatattttgtt--cttaagtgttttgattaatctgtttccccattatcctcttgtggtt----agTCTGTGGATGTAATGGACTACTCATTGCTGGTTGGATTCGACGAAGAGCGGAAAGAACTAGTTCTCGGGATCATCGACTTCATGAGACAGTACACATGGG
upper sequence: GLYMA07G34030.1 (Glycine max), 3'ss of exon 12
lower sequence: Vv01s0011g04790.t01 (Vitis vinifera), 3'ss of exon 10
atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttc--tccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
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--atttgtattgaaaaatcatgaatgtcttcaaagacctaccgatgggcatgctttgttaggccgtacatgtttttaattcagttttcttatgcttctccagTCTGTTGACGTCATGGACTATTCACTGTTGGTTGGGGTGGACAATGAGCGCAAAGAACTGGTTTTAGGGATCATTGATTTCATGAGGCAGTATACATGGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51345091|gb|CO985824.1|CO985824EST: AAGAGAAAGATATCCAGGATATATGATCTCAAGGGCTCAGAAAGATCTAG TCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
genomic: AAGAGAAAGATATCCAGGATATATGATCTCAAGGGCTCAGAAAGATCTAGgtataatcct ... ggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
tactcac putative branch site (score: 1)
ctttactttctccctt CT-rich tract
ttagtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atggttttactttatgacccaaaatatttttaactagcagtttcttggttttagtatatggttgttactcactttactttctccctttgtggttcttcagTCTGTTGACGTTATGGACTATTCTTTGCTGGTTGGAGTCGACGATGAGCGCAAGGAACTGGTTCTGGGGATCATTGATTTCATGAGACAATACACATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - -cccaaaa