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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtcaacttgatgtttatttcttctttactcactttgaatttgaatattgtattattatctcaacacccccttttgatccagtattggtagctcaaggcgaacatacaattattaaatctgttccttttggctattggaatttggatatagatctgacactgttgcatgtgactttatttatagGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAG

Basic information

species Glycine max
transcript GLYMA18G11950.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11950.1 (Glycine max), 3'ss of exon 10
lower sequence: AT4G16630.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaagagtcaacttgatgtttatttcttctttactcactttgaatttgaatattgtattattatctcaacacccccttttgatccagtattggtagctcaaggcgaacatacaattattaaatctgttccttttggctattggaatttggatatagatctgacactgttgcatgtgactttatttatagGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAG
                                                                                     |||||  | |||  ||  |  |  | |||      | ||| |||    | |||  ||  ||||    |    |   |||||||    | |||  | |||   |||| |||||||| |||||||||||||||||||| || | ||| ||||| || ||  |    ||
----------------------------------------------------------------------------------gtaagtataagaagcaaaaaacttattttcaa-----gattctcttctcagtagct-ctgctattta---acctcttgaacactgtctgctttga--tcattc-cagGGACTTGACATCATTGGTGTTCAAACAGTTATAAATTATGCTTGTCCTCGGGAAATAGACAG

upper sequence: GLYMA18G11950.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 10
gtaagagtcaacttgatgtttatttcttctttactcactttgaatttgaatattgtattattatctcaacacccccttttgatccagtattggtagctcaaggcgaacatacaattattaaatctgttccttttggctattggaatttggatatagatctgacactgttgcatgtgactttatttatagGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAG
                                                                               ||  |    |   | || |||     |  ||| |||   | ||  |   || | |   | ||    ||| | |  |||||| || || |||   ||| ||   | | ||||| |||||||| |||||||||||||||||||| |||| ||||||||| || |||||||| ||
-----------------------------------------------------------------------------catggacatacacaaggagttcagc---agtataaaatggatgaaaataaaccatgt--tttttttttttttggtg-agatctcac-cttttg---gtgcctc--tctgtagGGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggctattggaatttggatatagatctgacactgttgcatgtgactttatttatagGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAG
                      atctgac  putative branch site (score: 3)
                                           ctttattt  putative PPT
                                        tgactttatttata  TA-rich tract