1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ggttcttaatgagctgcatatgaaaatagatgttgcaaagtgttcaaatgtttgtcttttaatttgaagatcctaactaattctccttgtaaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATA
species | Glycine max |
transcript | GLYMA04G39520.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAG AAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGEST: gi|9563849|gb|BE473358.1|BE473358
genomic: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGgtttgtaatg ... aaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCG
EST: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAG AAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGEST: gi|31468557|gb|CD410585.1|CD410585
genomic: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGgtttgtaatg ... aaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCG
EST: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAG AAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGEST: gi|11117944|gb|BF219537.1|BF219537
genomic: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGgtttgtaatg ... aaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCG
EST: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAG AAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCG
genomic: GAAAGATTACTTTGAAGAGACTTGCGGAGCTTTTGTGTCTCAGTGTTCAGgtttgtaatg ... aaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCG
aaatgtttgtcttttaatttgaagatcctaactaattctccttgtaaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATA
tttgtcttttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcttaatgagctgcatatgaaaatagatgttgcaaagtgttcaaatgtttgtcttttaatttgaagatcctaactaattctccttgtaaaatttcagAAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCTAAGGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - tgcatat
- - - - - - - - - - - - - - - tgttgca
- - - - - - - - - - - - - - - - - - - agtgttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccttg