1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atattttttttaactatatcttattttgttgtataacggtgttaattattatttgtgatttgcttgcgtcggtgaatgtttaattctttggtcgatgcagGCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTCTTTACTACTTCTGGAATGTTGTTTCTAGAAGTGAGCTTGCTGGCTTTTT
species | Glycine max |
transcript | GLYMA20G37380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCTCTGGCTTGTCAGCATCCTCAATCTTCTTTGGTGCTTTTCCCAG GCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTCEST: gi|213605342|gb|DB966916.1|DB966916
genomic: CTTCCCTCTGGCTTGTCAGCATCCTCAATCTTCTTTGGTGCTTTTCCCAGgtcaacctat ... gtcgatgcagGCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTC
EST: CTTCCCTCTGGCTTGTCAGCATCCTCAATCTTCTTTGGTGCTTTTCCCAG GCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTC
genomic: CTTCCCTCTGGCTTGTCAGCATCCTCAATCTTCTTTGGTGCTTTTCCCAGgtcaacctat ... gtcgatgcagGCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTC
ttattatttgtgatttgcttgcgtcggtgaatgtttaattctttggtcgatgcagGCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTCTTTACTACTTCTGGAATGTTGTTTCTAGAAGTGAGCTTGCTGGCTTTTT
gtttaat putative branch site (score: 4)
aatgtttaattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattttttttaactatatcttattttgttgtataacggtgttaattattatttgtgatttgcttgcgtcggtgaatgtttaattctttggtcgatgcagGCGTGGGAGTGCTCTCCTGGGAAAGAGTTTGCGTGGAACTTGTTGTCCCTCTTTACTACTTCTGGAATGTTGTTTCTAGAAGTGAGCTTGCTGGCTTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - tgttgta
- - - - - - - - - - - - - - - - - - -ggtgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgt