Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26058969|gb|CA801883.1|CA801883EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST:
gi|192317649|gb|FK009017.1|FK009017EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST:
gi|10844179|gb|BF067506.1|BF067506EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST:
gi|7028518|gb|AW458301.1|AW458301EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST:
gi|58014910|gb|CX701652.1|CX701652EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
EST:
gi|213617850|gb|DB957359.1|DB957359EST: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTG CTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
genomic: TCTTCTTATACAGATCCGCCGCCCCTTCTTCCTCCCAACGCCGCTTTCTGgttccctctc ... gaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgtcactttcattatctaatagatttttcttttgattgcatgttggaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGAAGAATTTGTGGTTTCACGATTTTACCCCTCGAAATCAGAAGTATCAGTA
ccttt CT-rich tract
tttcattatctaatag TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccctctcttccccaacccttaaccacatcttttcgcccaatttttaattattgttattattattattattttttaatttgttaccgttgtcactttcattatctaatagatttttcttttgattgcatgttggaacctttagCTGTGGACCCGGTTTATGACGATTCCTTGGCAAACAACAAACGCATATTGAAGAATTTGTGGTTTCACGATTTTACCCCTCGAAATCAGAAGTATCAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT