1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcgatacaatcctcagtttctaatcttcatttttctcagattttagattttccaatgcgtttgaatcccttttcgatcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGTCAAAATAAACTTGGATGGTTCTGGGGTGGCTGATAGTAGTACTGGAAT
species | Glycine max |
transcript | GLYMA20G28420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|254323948|gb|GR836180.1|GR836180
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|27427329|gb|CA938849.1|CA938849
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|192298863|gb|FG987608.1|FG987608
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|209713506|gb|BW679283.1|BW679283
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|12691429|gb|BG157765.1|BG157765
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|151393539|gb|EV263414.1|EV263414
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCGGEST: gi|120528949|gb|EH257083.1|EH257083
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG ATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGEST: gi|298186844|gb|HO033943.1|HO033943
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
EST: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAG GTGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
genomic: CTTGGTGGGAGACAACGCTTCGGCCACGACCACTTTGCCAATTGACTCAGgtcgatacaa ... tcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAG
tttctcagattttagattttccaatgcgtttgaatcccttttcgatcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGTCAAAATAAACTTGGATGGTTCTGGGGTGGCTGATAGTAGTACTGGAAT
tcattttc CT-rich tract
agattttagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgatacaatcctcagtttctaatcttcatttttctcagattttagattttccaatgcgtttgaatcccttttcgatcattttcagATGCTAGAATCGGAGAGGTTAAAAGGGTCACCAAGGAGACCAATGTATCAGTCAAAATAAACTTGGATGGTTCTGGGGTGGCTGATAGTAGTACTGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT