Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaggaaccaaaaggataatttagcattagagcagcttcctaatgattgacattgttgtgacttttgtgatagttaaaattcattaattttctactccagGTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATAATTAAACGATGTGTTCTTAGTCGGAACCCAATTTTAGCTGTGAG

Basic information

species Glycine max
transcript GLYMA19G36140.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562475|gb|BG550695.1|BG550695
EST:     GCCGCTTGGTCACGTGCAGCCACGTGGGGGAGGCTGTTGAACTCATGGAG                         GTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATAATTAAAC
genomic: GCCGCTTGGTCACGTGCAGCCACGTTGAGGAGGCTGTTGAACTCATGGAGgttctcgcac ... tctactccagGTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATAATTAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgacattgttgtgacttttgtgatagttaaaattcattaattttctactccagGTTTCCAGATATCAATCAGGGAACTTGTTCAGCCGTCTGACATAATTAAACGATGTGTTCTTAGTCGGAACCCAATTTTAGCTGTGAG
                                    cattaat  putative branch site (score: 3)
                                          ttttctactcc  CT-rich tract
                 ttttgtgatagttaaa  TA-rich tract