1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gttggccttataatggaatcctactttaattatcacttttgtatttttgcaattaatgattaaattaaaatacactaacggttggtattacctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAGA
species | Glycine max |
transcript | GLYMA18G11630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGA ATGACATCCGCAAGAATCNTGCATTCAGATCACAGTTTCATGAAATGTGTGEST: gi|209710765|gb|BW671056.1|BW671056
genomic: CCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGGttcgtttttt ... cctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTG
EST: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGA ATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGEST: gi|6072046|gb|AW101493.1|AW101493
genomic: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGGttcgtttttt ... cctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTG
EST: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGA ATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGEST: gi|7685473|gb|AW756121.1|AW756121
genomic: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGGttcgtttttt ... cctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTG
EST: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGA ATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGEST: gi|58016320|gb|CX703062.1|CX703062
genomic: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGGttcgtttttt ... cctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTG
EST: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGA ATGACATCCGCAAGAATCNTGCATTCAGATCACAGTTTCATGAAATGTGTG
genomic: GCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGGttcgtttttt ... cctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTG
tttgcaattaatgattaaattaaaatacactaacggttggtattacctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAGA
cactaac putative branch site (score: 1)
cctgttc putative PPT
aattaatgattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggccttataatggaatcctactttaattatcacttttgtatttttgcaattaatgattaaattaaaatacactaacggttggtattacctgttcagaATGACATCCGCAAGAATCCTGCATTCAGATCACAGTTTCATGAAATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggta