1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acttatcattcaatcagatgattcatcgaaataaaataaaagcaagatcatcttccttttggaatgtgtacttaaatttctctgattaattctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTC
species | Glycine max |
transcript | GLYMA18G11030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGG AAAGTTATATCGGGATATAGTEST: gi|208158489|gb|GD956968.1|GD956968
genomic: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGGtaaaatttga ... tctttccaggAAAGTTATATCGGGATATAGT
EST: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGG AAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTEST: gi|208170528|gb|GD969763.1|GD969763
genomic: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGGtaaaatttga ... tctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGT
EST: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGG AAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTEST: gi|19935326|gb|BQ080356.1|BQ080356
genomic: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGGtaaaatttga ... tctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGT
EST: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGG AAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGT
genomic: GCACTTCTCAAGGCAACTGATTTTGGCCTGTCGGTCTTCATTGAAGAAGGtaaaatttga ... tctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGT
gatcatcttccttttggaatgtgtacttaaatttctctgattaattctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTC
gattaat putative branch site (score: 3)
ttctttcc CT-rich tract
tacttaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttatcattcaatcagatgattcatcgaaataaaataaaagcaagatcatcttccttttggaatgtgtacttaaatttctctgattaattctttccaggAAAGTTATATCGGGATATAGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - cattcaa
- - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgtac