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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctattaaatagaacttcattgatatttcttctataaaatgagtaagtgtccataccttggtactcatattgtttttcattctttttcctcttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTC

Basic information

species Glycine max
transcript GLYMA18G10060.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298185972|gb|HO031133.1|HO031133
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|14989982|gb|BI315655.1|BI315655
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|298187958|gb|HO031915.1|HO031915
EST:     AAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: AAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|37996838|gb|CF808427.1|CF808427
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|15203335|gb|BI426103.1|BI426103
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|21286010|gb|BQ473881.1|BQ473881
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|26048855|gb|CA785308.1|CA785308
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|192328423|gb|FK020711.1|FK020711
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|208199026|gb|GD999435.1|GD999435
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGGATATAATGAAG
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAG
EST: gi|298169593|gb|HO020953.1|HO020953
EST:     ACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: ACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|10710570|gb|BF010288.1|BF010288
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|151404720|gb|EV274534.1|EV274534
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|23728346|gb|BU762225.1|BU762225
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|298173914|gb|HO017250.1|HO017250
EST:     CTAATTCAGAAGAAAAAAGTCACCTTCTCCGGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: CTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|15337095|gb|BI497751.1|BI497751
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|298192925|gb|HO033359.1|HO033359
EST:     CTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: CTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|254334673|gb|GR844458.1|GR844458
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|192309833|gb|FK002945.1|FK002945
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|20449153|gb|BQ253277.1|BQ253277
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
EST: gi|4303268|gb|AI443452.1|AI443452
EST:     TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGC                         GGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT
genomic: TTAGAAACCCTAATTCAGAAGAAAAAAGTCACCTTCTCCAGAATTTGCGCgtaagattag ... cttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtccataccttggtactcatattgtttttcattctttttcctcttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTC
                  ctcatattgtttttca  CT-rich tract
                     atattgtttttcattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctattaaatagaacttcattgatatttcttctataaaatgagtaagtgtccataccttggtactcatattgtttttcattctttttcctcttatttcagGGTAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCTGTGAAACTTGCTGATGATATCACTGGCATGATTTCTGAACGTAGTTCATTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - aaatagaa
- - - - - - - cttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - ccatacc