1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataataccttttctctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAA
species | Glycine max |
transcript | GLYMA17G01940.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTEST: gi|209729757|gb|BW658562.1|BW658562
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
EST: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTEST: gi|208231914|gb|GE032731.1|GE032731
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
EST: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG TTGCGAGATGACCTTCAGGCCTTCGEST: gi|213602250|gb|DB958510.1|DB958510
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCG
EST: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAG TTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
genomic: TTCTCCGCCCTGGCAATCTCGTCGGTCCCAGGTTCGAACCAGGCGCTGAGgtattattac ... tctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGT
atatatatatatatatatatatatatatatatataataccttttctctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAA
taccttttctctgtc CT-rich tract
tatatatatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataataccttttctctgtcgcagTTGCGAGATGACCTTCAGGCCTTCGCCAAAGTGTTGGTGGTAGGGGCCGGTGGCTTAGGTTGTGAGTTGTTGAAGGATTTAGCCCTCTCTGGTTTCCGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG