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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttaatatggtactttctgaaatagatgatgaaattctatcatcttgtggtaataattgctttgttttgtttctcccttttgctggaaaatgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCGCACAAGCC

Basic information

species Glycine max
transcript GLYMA13G35120.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35120.3 (Glycine max), 3'ss of exon 1
lower sequence: Vv19s0014g02480.t01 (Vitis vinifera), 3'ss of exon 1
atttaatatggtactttctgaa---atagatgatgaaattctatcatcttgtggtaataattgctttgttttgtttctcccttttgctggaaaatgtgtg-cagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCGCACAAGCC
 |||  |   ||   || |  |   ||     ||    |  |   ||||   | ||||  ||  ||| |  |   |   | |||| ||   | |||| |  |||| ||||| || ||||| ||||  ||||||||||||||||||||||| |  ||||||| | |||||||| | |||||||| || || |  ||  | |||||
ttttgtttctgtgtattgtttatttatgcccaattgcttgtttggatctctagataatg-ttaatttatgattaattggcatttttct---atatgtttatcagGGGTTCAAAAGGAAAGGATGGTTCCAGAGGACATGTATGTGTTATCTCCAAGTGGGTGTTTCTTGTCTTCCCCATCTCCGAAGCCATACCCAAATAAGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18039935|gb|BM308229.1|BM308229
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|209713814|gb|BW684006.1|BW684006
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|209717225|gb|BW657694.1|BW657694
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATATATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|209711765|gb|BW678947.1|BW678947
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATATATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|298191951|gb|HO036033.1|HO036033
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGTCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|298190687|gb|HO032808.1|HO032808
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCACAGGACATGTATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA
EST: gi|209700267|gb|BW664493.1|BW664493
EST:     CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTG                         GTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATATATGTGTTATCACACA
genomic: CGATGACTCCATCCCCAGGCCTCAACAGCTCATACTCATGGCCCCTTCTGgtatcttccc ... atgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtggtaataattgctttgttttgtttctcccttttgctggaaaatgtgtgcagGTGTTCAGAAAGAAAGAATGGAGCCAGAGGACATGTATGTGTTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCGCACAAGCC
      taataatt  TA-rich tract