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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgctttgtttatgttgcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttttttatttatttaatgttttgttttgtgaaaagCACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATG

Basic information

species Glycine max
transcript GLYMA08G47680.3
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47680.3 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 3'ss of exon 3
gtaggtgctttgtttatgtt---gcaagagatatgtgtcgacgattgctttcggttatgcacaagatttgtgtttaagtgaaattgcctgagtttt---ttta-----tttatttaatgttttgttttg--------tgaaaagCACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATG
||| ||     |||| | ||    || || ||   | |   | ||  ||||   |  | || |  ||  | || |  || ||||  ||  |    |   ||||     | |||||||   |||||||||        | || ||||| || ||||||||||||||| | |||| ||||||||| ||||| |  ||||| || ||||||||||||
gtatgtctgaggtttcttttcaaacaggatatgattatttgcaat--ctttatttctttcaaagaatgagagtctttgtcaaatcacccaaaccctacatttacaatttctatttaaaaatttgttttggttattgttaaacagCACTCTGGGTGGCAGTCATGGAGTGCCTAGAGTACACTATAAAGGAAAGCAAGGAGACTATTATGTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715930|gb|BW650947.1|BW650947
EST:     AACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAA                         CACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACA
genomic: AACAGCAAAGGCTGTAACTATGGCCCTCCTTACGAGTGGCAAGTGTACAAgtaggtgctt ... ttgtgaaaagCACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagtgaaattgcctgagtttttttatttatttaatgttttgttttgtgaaaagCACCCTTGGTGGCAGTCATGGAATACCTAAAGTACACTACAAAGGGAGACAAGGGGAATATTATGTGATG
                              atttaat  putative branch site (score: 4)
                                      ttttgtttt  CT-rich tract
                 agtttttttatttatt  TA-rich tract