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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcctacttcctacctacctatttctttaataatcatctatcttcttcttcttcttcttcttattattattattatctgcttatttactattgaattgtgtgctgtgcagTCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTACGCCGTTCCCTCCGGCGAGTGGCCCGATTTGTTGCCCTTTCTCTTCGAA

Basic information

species Glycine max
transcript GLYMA08G19960.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723005|gb|BW668849.1|BW668849
EST:     AAACAACTCGTCATGCAGTCCCTCATCGAAACCATTACCATGGAGCACAG                         TCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTA
genomic: AAACAACTCGTCATGCAGTCCCTCATCGAAACCATTACCATGGAGCACAGgttcctactt ... tgctgtgcagTCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTA
EST: gi|298189998|gb|HO032119.1|HO032119
EST:     AAACAACTCGTCATGCAGTCCCTCATCGAAACCATTACCATGGAGCACAG                         TCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTA
genomic: AAACAACTCGTCATGCAGTCCCTCATCGAAACCATTACCATGGAGCACAGgttcctactt ... tgctgtgcagTCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcttattattattattatctgcttatttactattgaattgtgtgctgtgcagTCCCCCTGTTAGGAAAGCCAGTGCCAACGTTGTCAGTATCGTTGCCAAGTACGCCGTTCCCTCCGGCGAGTGGCCCGATTTGTTGCCCTTTCTCTTCGAA
     ttattattattattat  TA-rich tract