1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgtaccacaataggcatatttcccatagaaggaatggcatgaaatcctgtgacccctatcactgtggtgtgtcaataacattttaatttattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATCACTCGCCGTCTTGCCCATGGAGATAAGAAGGCTGTTGCTCGCCGATGT
species | Glycine max |
transcript | GLYMA07G39190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|213614221|gb|DB956805.1|DB956805
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|213604284|gb|DB970572.1|DB970572
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|213597852|gb|DB962205.1|DB962205
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|209707659|gb|BW676638.1|BW676638
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|13477625|gb|BG507431.1|BG507431
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATEST: gi|192333312|gb|FK024289.1|FK024289
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
EST: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCT ATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
genomic: TGGCTTCCAACCTTTTTGCTCCATTCATTCTCAACAACAAACCAATCTCTgtcagtgctc ... tattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGAT
atcctgtgacccctatcactgtggtgtgtcaataacattttaatttattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATCACTCGCCGTCTTGCCCATGGAGATAAGAAGGCTGTTGCTCGCCGATGT
tttattcttc CT-rich tract
tcaataacattttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtaccacaataggcatatttcccatagaaggaatggcatgaaatcctgtgacccctatcactgtggtgtgtcaataacattttaatttattcttcagATATTTTGCTTAGACAATGAGGGGGAGCTTGTGGCAACTTGGGCAATCGATCACTCGCCGTCTTGCCCATGGAGATAAGAAGGCTGTTGCTCGCCGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - -accacaa
- - - - - - - - - - tttccca
- - - - - - - - - - - - - - - - - - - gcatgaa
- - - - - - - - - - - - - - - - - - - - - - - -cctgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgtg