Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT

Basic information

species Chlamydomonas reinhardtii
transcript EDP06420
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G132968_T02 (Zea mays), 3'ss of exon 5
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT
                                                                            || ||    | | |  ||  ||   | | |    |  | |  |  |          ||| |   || |     |   ||  |||   |     |  |  |||   | |   | |  | |   |    |       |  |   | |    | |||||   | || ||  | |  ||||      ||| ||                            
----------------------------------------------------------------------------gtactatttctgagcttct-tgtactaacttgcacaatctgtttacctttgttgctcttgttggttacggattgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACT--ATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG----------------------------

upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G135727_T01 (Zea mays), 3'ss of exon 5
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT
                                                                            || ||    | | |  ||  ||   | | |    |  | |  |  |          ||| |   || |     |   ||  |||   |     |  |  |||   | |   | |  | |   |    |       |  |   | |    | |||||   | || ||  | |  ||||      ||| ||                            
----------------------------------------------------------------------------gtactatttctgagcttct-tgtactaacttgcacaatctgtttacctttgttgctcttgttggttacgaattgctgccatttgcagGACCGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCACT--ATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGATGCTGTGTGGGTCCAAAGAAG----------------------------

upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G109677_T04 (Zea mays), 3'ss of exon 6
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT
                                                                            || ||    | | |  ||  ||   | | |    |  | |  |  |          ||| |   |  |     |   ||  |||   |  |  |  |  ||| ||  |     |  ||  | |   ||       |  |   | |    | |||||   | || ||  | |  ||||      ||| ||                            
----------------------------------------------------------------------------gtactatttctgagcttct-tgtactaacttgcacaatctgtttacctttgttgctcttgttggtaacgaattgctgccatttgcagGACTGAGAAGGACAT-CACTCCCATGGGTGGCTTCCCCCATTA-TGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGCTGCTGTGTGGGTCCAAAGAAG----------------------------

upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G324314_T05 (Zea mays), 3'ss of exon 5
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcg-ttgtcctcgctc-cacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT
                                                                                                  | |  ||| ||| | |||| ||  ||  |||      ||| || ||| ||||  |    | |   |     ||||| |       |||  | |  ||  | |||  |    || |   |||  | ||    |      |   | ||    | |  |||  |  ||||      |  |  || | | |          
--------------------------------------------------------------------------------------------------gtactatttctgagcttgtactaacttgcacaatctgtttacctttg-ttgctcttgttggtaacgaattgctgccatt------tgcagGACTGAGAAGGACATCACTCCCATGGGTGGCTTCCCCCATTATGGTATCGTGAAGGGTGACTACCTGATGATCAAGGG-----CTGCTGTGTGGGACCAAAGAAG--

upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM5G801409_T04 (Zea mays), 3'ss of exon 4
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT
                                                                          || |      ||  | | |   ||   | | |    |  | |  |  |          ||| |   |  |     |   ||  |||   |  |  |  |  ||| ||  |     |  ||  | |   ||       |  |   | |    | |||||   | || ||  | |  ||||      ||| ||                            
-----------------------------------------------------------------------gtactatttctgagcttcttgtacatgtactaacttgcacaatctgtttacctttgttgctcttgtttgtaacgaattgctgccatttgcagGACTGAGAAGGACAT-CACTCCCATGGGTGGCTTCCCCCATTA-TGGTATCGTGAAGGGTGACTACCTGATGATCAAGGGCTGCTGTGTGGGTCCAAAGAAG----------------------------

upper sequence: EDP06420 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G361049_T01 (Zea mays), 3'ss of exon 11
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCC-----CCATGGGTGGCTTCCCCCACT--------
                                                                                                                 | |||| | | ||| ||  |  |  ||||| |  |  ||     ||    ||  || | ||   |  ||||| |  |    | |||| || ||  ||| |   |    |||      |||   || |  | | || | | | ||||  || ||  |||       || |||| ||| |  |  |         
----------------------------------------------------------------------------------------------------------------gtatccttgattcactgcagcagtaacattgttcacaatcttgagtt---tgctccttcagtttctgaatgctggttg----tttacagGACCGAGAAGGACATCACTCCCA--TGGGTGGTTTCCCCC-ACTACGGTATCATCAAG--GGCGACTACCTGATGATCAAGGGTTGCTGCGTCGGCCCCAAGAAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34985813|gb|CF559730.1|CF559730
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACA-GAAG                         GTGTACAAGATCGGCAAAGA-GGGCGACGCCAGCCACCTGGCCACCCACGG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAA-GAAGGGCGACGCCAGCCACCTGGCCACC-ACGG
EST: gi|7615766|gb|AW721206.1|AW721206
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|15702370|gb|BI726675.1|BI726675
EST:     CGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161798195|gb|FC088022.1|FC088022
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161791893|gb|FC081531.1|FC081531
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCA
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCA
EST: gi|10781725|gb|AV638405.1|AV638405
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|23359892|gb|BU647712.1|BU647712
EST:     ACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: ACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22061437|gb|BQ814239.1|BQ814239
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGTACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6548958|gb|AV394742.1|AV394742
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|34985456|gb|CF559373.1|CF559373
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|7616123|gb|AW721563.1|AW721563
EST:     CCCGCGCCGGTCAGAAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGGACTAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6548260|gb|AV394044.1|AV394044
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161815497|gb|FC104849.1|FC104849
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6548815|gb|AV394599.1|AV394599
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22069015|gb|BQ818724.1|BQ818724
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|34985812|gb|CF559729.1|CF559729
EST:     AGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGGGACGCCAGCCACCTGGCCACCACGGAG
genomic: AGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161820072|gb|FC107574.1|FC107574
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161810159|gb|FC099302.1|FC099302
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATC
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATC
EST: gi|22062672|gb|BQ814885.1|BQ814885
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161822630|gb|FC108488.1|FC108488
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGA
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGA
EST: gi|34985455|gb|CF559372.1|CF559372
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCCCCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6545141|gb|AV390925.1|AV390925
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161800009|gb|FC083320.1|FC083320
EST:     CCCGCGCCGGTCAGCANGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATC
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATC
EST: gi|161794751|gb|FC082211.1|FC082211
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGAT
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGAT
EST: gi|161815361|gb|FC100982.1|FC100982
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCTGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161801138|gb|FC084787.1|FC084787
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6546962|gb|AV392746.1|AV392746
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|10777401|gb|AV634081.1|AV634081
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCC
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCC
EST: gi|15702371|gb|BI726676.1|BI726676
EST:     CGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161805130|gb|FC091707.1|FC091707
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCCGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|34985454|gb|CF559371.1|CF559371
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCCCCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGGGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161796768|gb|FC084528.1|FC084528
EST:     CCCGCGCCGGTCAGCAGGGCTTC-ACCACCGCACTGAGATCAACAAGA-G                         GTGTACAAGATCGGCAAGAAGGGCG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCG
EST: gi|161792436|gb|FC080091.1|FC080091
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|10777238|gb|AV633918.1|AV633918
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161801307|gb|FC090429.1|FC090429
EST:     CCCGCGCCGGTCAGCAGGGCTTCC-CCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCNGCCACCTGGCCACCAC
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCAC
EST: gi|161791379|gb|FC082305.1|FC082305
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161794594|gb|FC080845.1|FC080845
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6541341|gb|AV387125.1|AV387125
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6547979|gb|AV393763.1|AV393763
EST:     CCCGCGCCGGTCAGCAGGTCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGG
EST: gi|161810645|gb|FC095043.1|FC095043
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22075738|gb|BQ824514.1|BQ824514
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|49468312|gb|BP096173.1|BP096173
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161811019|gb|FC095274.1|FC095274
EST:     CCCGCGCCGGTCAGCAGGGCTTC-ACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCA
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCA
EST: gi|22073720|gb|BQ823058.1|BQ823058
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161815284|gb|FC101555.1|FC101555
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|14238040|gb|BG856856.1|BG856856
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6545591|gb|AV391375.1|AV391375
EST:     CCCGCGCCGGTCAGCAGGTCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCA-GAAGGG-GACGC
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGC
EST: gi|10775618|gb|AV632298.1|AV632298
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|49463336|gb|BP091249.1|BP091249
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGA
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGA
EST: gi|161820429|gb|FC106969.1|FC106969
EST:     CC-GCGCCGGTCAGCAGGGCTTCCACCAC-GCACTGAGATCAACA-GAAN                         GTGTACAAGGATCG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAG-ATCG
EST: gi|7593570|gb|AW707821.1|AW707821
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCCCCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|34984667|gb|CF558584.1|CF558584
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|18690252|gb|BM519100.1|BM519100
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22069839|gb|BQ819331.1|BQ819331
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161811046|gb|FC094456.1|FC094456
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22069640|gb|BQ819185.1|BQ819185
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161798733|gb|FC085827.1|FC085827
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6547012|gb|AV392796.1|AV392796
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161810651|gb|FC096817.1|FC096817
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161810834|gb|FC096909.1|FC096909
EST:     CCCGCGCCGGTCAGCAGGGCTTCCAC-ACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCG
EST: gi|23359891|gb|BU647711.1|BU647711
EST:     ACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACTTGGCCACCACGGAG
genomic: ACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|22075050|gb|BQ823826.1|BQ823826
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|161799263|gb|FC084979.1|FC084979
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
EST: gi|6546948|gb|AV392732.1|AV392732
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCG
EST: gi|6543551|gb|AV389335.1|AV389335
EST:     CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAG                         GTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG
genomic: CCCGCGCCGGTCAGCAGGGCTTCCACCACCGCACTGAGATCAACAAGAAGgtgcgaggcg ... cttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcgaggcggccgtggcgactggaataatgtttagtgccctgttggggagggtgtaccggattatggggatggctgtgctgccgcagcgtatcggtgggatgattcctgcgttgtcctcgctccacggctccttttccattgcttgcggtcaccgcttgtgcgcatctgccgtgcattcatgcttggcgcagGTGTACAAGATCGGCAAGAAGGGCGACGCCAGCCACCTGGCCACCACGGAGTTCGATGTGACCAAGAAGGAGATCACCCCCATGGGTGGCTTCCCCCACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA