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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctggcagaataaccgtggaaaccgtagtcacacacacacacacacacacactcctacacacacacacacacctacacacacacacacgcgcgcgcgcagGTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAGTCTCTGCGGCTGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCA

Basic information

species Chlamydomonas reinhardtii
transcript EDP04038
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8514381|gb|BE122276.1|BE122276
EST:     GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAG                         GTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAG
genomic: GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAGgtgggcggac ... gcgcgcgcagGTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAG
EST: gi|14232424|gb|BG851240.1|BG851240
EST:     GTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACTAG                         GTGTGCGGCCAGGTGGTTGTGNGAGTCGTTCCGGGACTTCAGTGTGCTGC
genomic: GTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATAC-AGgtgggcggac ... gcgcgcgcagGTGTGCGGCCAGGTGGTTGTG-GAGTCGTTCCGGGACTTCAGTGTGCTGC
EST: gi|23367540|gb|BU655358.1|BU655358
EST:     GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAG                         GTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAG
genomic: GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAGgtgggcggac ... gcgcgcgcagGTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAG
EST: gi|15695993|gb|BI720298.1|BI720298
EST:     GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAG                         GTGTGCGGCCAGGTGGTTGTGGGAGTCGT-CCGGGACTTCAGTGTGCTGCA
genomic: GGTGGAACCTGTGGGTGCTCTGCCGCGCCGTACACGACCCATACATACAGgtgggcggac ... gcgcgcgcagGTGTGCGGCCAGGTGGTTGTGG-AGTCGTTCCGGGACTTCAGTGTGCTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tctggcagaataaccgtggaaaccgtagtcacacacacacacacacacacactcctacacacacacacacacctacacacacacacacgcgcgcgcgcagGTGTGCGGCCAGGTGGTTGTGGAGTCGTTCCGGGACTTCAGTGTGCTGCAGTCTCTGCGGCTGCAGCAGTTGCCGCACGCCATCATGAAGAAGAACTTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - agtcaca
- - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctacaca