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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcaagcgaggctgctggaaggggccaggggcagccacgtgcggcagtttggtcactcaggaggttgcaacacgccgtgactgatatggccaagtatgtacacctctgttgcggcatatcgaaaagcatcggctcttacaactgtatacccgtcccttcttttattgcgtgctgcagGAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCGGTGCCGCTGCCGCTGTGGCCTGGCTGCATAGCGTGTGTACCTCAGCAGG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04420
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15372128|gb|BI531554.1|BI531554
EST:     AGCAGCGCATCAACCAAATGGTCTTCATTGGGCGAGGGCTGGACAGGGAG                         GAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCG
genomic: AGCAGCGCATCAACCAAATGGTCTTCATTGGGCGAGGGCTGGACAGGGAGgtgagcaagc ... cgtgctgcagGAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCG
EST: gi|8400905|gb|BE056539.1|BE056539
EST:     AGCAGCGCATCAACCAAATGGTCTTCATTGGGCGAGGGCTGGACAGGGAG                         GAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCG
genomic: AGCAGCGCATCAACCAAATGGTCTTCATTGGGCGAGGGCTGGACAGGGAGgtgagcaagc ... cgtgctgcagGAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagcatcggctcttacaactgtatacccgtcccttcttttattgcgtgctgcagGAGCTGACGGCAGGCTTCAGCACTTGTGTGCATGCACCTGCACCCCCGGCGGTGCCGCTGCCGCTGTGGCCTGGCTGCATAGCGTGTGTACCTCAGCAGG
          ctcttac  putative branch site (score: 3)
                              tcccttcttttattgc  putative PPT
                                  ttcttttatt  TA-rich tract