1 5' 3' | 2 5' 3' |
...agcccaacagcagctccatttgatcaaatggcacactccgacaactgcgctggctaccccaaacccccttacccctatcccgccacacgcgcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGCTGCAGAAGCACGGCCTGGTGCGGGTCAAGCTGGGCGAGGGCAGCGGCG
species | Chlamydomonas reinhardtii |
transcript | EDP06549 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGEST: gi|14237032|gb|BG855848.1|BG855848
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGEST: gi|6541570|gb|AV387354.1|AV387354
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
EST: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAG GTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
genomic: GCGCCCGGGCGGAGGCTCTGGCCAAGGAGAAGAAGCTCATCCGCGTGCAGgtgcggcagc ... gcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTG
tgcgctggctaccccaaacccccttacccctatcccgccacacgcgcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGCTGCAGAAGCACGGCCTGGTGCGGGTCAAGCTGGGCGAGGGCAGCGGCG
cccttac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcccaacagcagctccatttgatcaaatggcacactccgacaactgcgctggctaccccaaacccccttacccctatcccgccacacgcgcccgcacagGTGGGTCAGCTGGGCATCACGCCGGCCTTCCTGCGCGCCACGTCCGACGTGCTGCAGAAGCACGGCCTGGTGCGGGTCAAGCTGGGCGAGGGCAGCGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- cccaaca
- - - - - - - - - - - - - - - -cacactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccaaa